Dear Lybrate user. Penile pain is an itching, burning, or unpleasant throbbing sensation in the base, shaft, head, or foreskin of the penis. Penile pain can be a result of an accident or disease like balantis, urinary tract infection, urithritis, bladder stone, prostatitis, herpes, chalmydia etc. You should leave it untreated. Do consult an urologist at the earliest. Take care.